STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pacLPacL; Cation-transporting ATPase PacL. (350 aa)    
Predicted Functional Partners:
pma1
Pma1; Cation-transporting ATPase Pma1.
 
     0.976
trkA3
TrkA3; Na+/H+ antiporter (TrkA-N:TrkA-C).
  
 
 0.695
ACN15214.1
Conserved hypothetical protein.
  
 
 0.618
ACN15379.1
Conserved hypothetical protein.
 
  
 0.588
ACN17432.1
Transposase for insertion sequences IS116, IS110 and IS902 (IS111A/IS1328/IS1533 family protein).
       0.561
ACN16274.1
Predicted polyketide synthase.
  
 
 0.521
ACN17403.1
Putative Di- and tricarboxylate transporter.
  
  
 0.495
ACN13826.1
Sulfur deprivation response regulator (sodium-dependent transporter protein).
  
  
 0.465
ACN17430.1
Conserved hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
       0.451
ACN14500.1
Proton/hydrogen exchanger family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
 0.419
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.