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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN17515.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
rsmB
RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.826
ACN17514.1
Transposase.
       0.781
ACN17513.1
Hypothetical protein.
       0.773
fmt
Fmt; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.616
ACN13699.1
Putative cytoplasmic protein YrbL.
   
 0.477
ACN13750.1
Hypothetical protein.
   
 0.477
kdkA
KdkA; 3-deoxy-D-manno-octulosonic acid kinase KdkA (KDO kinase).
   
 0.477
ubiE6
UbiE6; Predicted menaquinone biosynthesis methyltransferase ubiE.
       0.428
ACN13195.1
Putative serine/threonine-specific protein kinase.
  
 
 0.424
ACN15704.1
Putative serine/threonine protein kinase.
  
 
 0.424
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.