STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
codACodA; Cytosine deaminase CodA. (423 aa)    
Predicted Functional Partners:
upp
Upp; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.945
pyrR
PyrR; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
    
 0.913
ACN17684.1
Basic membrane lipoprotein precursor.
 
     0.909
ACN17681.1
ABC-type sugar transport-system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.905
ACN17682.1
ABC-type sugar transport-system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.887
ACN17683.1
Putative ABC sugar transporter, fused ATPase subunits.
       0.789
carB2
CarB2; Carbamoyl-phosphate synthase, large subunit CarB2; Belongs to the CarB family.
  
  
 0.433
pyrD
PyrD; Catalyzes the conversion of dihydroorotate to orotate.
  
  
 0.411
pyrB
PyrB; Aspartate carbamoyltransferase PyrB; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.402
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.