STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uroDUroD; Uroporphyrinogen decarboxylase UroD; Belongs to the uroporphyrinogen decarboxylase family. (452 aa)    
Predicted Functional Partners:
hemD
HemD; Porphyrin biosynthesis protein HemD [includes: uroporphyrin-III C-methyltransferase; uroporphyrinogen-III synthase].
  
 
 0.949
hemE
HemE; Uroporphyrinogen decarboxylase HemE (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
  
 
0.928
cobW
CobW; Predicted cobalamin synthesis protein CobW.
 
  
 0.920
ACN14699.1
Hypothetical protein.
 
  
 0.800
ACN16064.1
Putative flavin-containing amine oxidoreductase family protein.
  
  
 0.664
hemC
HemC; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 
 0.642
ACN16953.1
Ferredoxin (4Fe-4S iron-sulfur cluster binding protein).
 
    0.624
fdx7
Fdx7; 4Fe-4S ferredoxin, iron-sulfur binding family protein Fdx7.
 
    0.620
ACN17786.1
Hypothetical protein.
       0.572
gltB2
GltB2; Glutamate synthase [NADPH], large chain (NADPH-GOGAT).
     
 0.523
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.