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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobWCobW; Predicted cobalamin synthesis protein CobW. (299 aa)    
Predicted Functional Partners:
uroD
UroD; Uroporphyrinogen decarboxylase UroD; Belongs to the uroporphyrinogen decarboxylase family.
 
  
 0.920
rpsN
RpsN; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.844
map
Map; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
   
 
 0.786
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.767
rpmB
RpmB; 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.701
ACN16488.1
Putative ABC-type manganese/zinc transport system, substrate-binding component; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.665
ACN17613.1
ABC-type zinc transport system, periplasmic binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.665
rpmG
RpmG; 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.640
dksA1
DksA1; DnaK suppressor protein DksA.
  
  
 0.616
dksA2
DksA2; DnaK suppressor protein DksA.
  
  
 0.616
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.