ACN17795.1 protein (Desulfobacterium autotrophicum)

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ACN17795.1

Conserved hypothetical protein. (140 aa)

Predicted Functional Partners:

rplU

0.943

rpmA

0.917

rpsP

0.914

rpsL

0.908

rpsG

0.903

rpmJ

0.898

rplD

0.892

rplM

0.885

rplT

0.876

rplQ

0.876

Your Current Organism:

Desulfobacterium autotrophicum

NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACN17795.1	rplD	HRM2_47460	HRM2_36250	Conserved hypothetical protein.	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.892
ACN17795.1	rplM	HRM2_47460	HRM2_30470	Conserved hypothetical protein.	RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.885
ACN17795.1	rplQ	HRM2_47460	HRM2_35990	Conserved hypothetical protein.	RplQ; 50S ribosomal protein L17.	0.876
ACN17795.1	rplT	HRM2_47460	HRM2_04600	Conserved hypothetical protein.	RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.876
ACN17795.1	rplU	HRM2_47460	HRM2_31700	Conserved hypothetical protein.	RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.943
ACN17795.1	rpmA	HRM2_47460	HRM2_31710	Conserved hypothetical protein.	RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.917
ACN17795.1	rpmJ	HRM2_47460	HRM2_36040	Conserved hypothetical protein.	RpmJ; 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.898
ACN17795.1	rpsG	HRM2_47460	HRM2_36290	Conserved hypothetical protein.	RpsG; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.903
ACN17795.1	rpsL	HRM2_47460	HRM2_36300	Conserved hypothetical protein.	RpsL; With S4 and S5 plays an important role in translational accuracy.	0.908
ACN17795.1	rpsP	HRM2_47460	HRM2_31010	Conserved hypothetical protein.	RpsP; 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.914
rplD	ACN17795.1	HRM2_36250	HRM2_47460	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Conserved hypothetical protein.	0.892
rplD	rplM	HRM2_36250	HRM2_30470	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.996
rplD	rplQ	HRM2_36250	HRM2_35990	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RplQ; 50S ribosomal protein L17.	0.995
rplD	rplT	HRM2_36250	HRM2_04600	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.990
rplD	rplU	HRM2_36250	HRM2_31700	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
rplD	rpmA	HRM2_36250	HRM2_31710	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.991
rplD	rpmJ	HRM2_36250	HRM2_36040	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RpmJ; 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.989
rplD	rpsG	HRM2_36250	HRM2_36290	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RpsG; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rplD	rpsL	HRM2_36250	HRM2_36300	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RpsL; With S4 and S5 plays an important role in translational accuracy.	0.999
rplD	rpsP	HRM2_36250	HRM2_31010	RplD; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	RpsP; 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.989

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