STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdF2PrdF2; Proline racemase PrdF; Belongs to the proline racemase family. (337 aa)    
Predicted Functional Partners:
proC
ProC; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.916
prdF1
PrdF1; Proline racemase PrdF; Belongs to the proline racemase family.
  
  
 
0.910
putA1
PutA1; Bifunctional protein PutA [Includes: Proline dehydrogenase; P5C dehydrogenase].
    
 0.909
dctQ11
DctQ11; TRAP-type C4-dicarboxylate permease, small subunit Dct11.
       0.737
dctM11
DctM11; TRAP-type C4-dicarboxylate permease, large subunit DctM11.
       0.737
ooxA
OoxA; Opine oxidase, subunit alpha OoxA.
 
   
 0.659
soxB2
SoxB2; Sarcosine oxidase, subunit beta SoxB.
 
  
 0.598
soxA2
SoxA2; Sarcosine oxidase, subunit alpha SoxA.
 
     0.525
ACN16906.1
FAD dependent oxidoreductase.
 
  
 0.442
dctP11
DctP11; TRAP-type C4-dicarboxylate transporter, periplasmic component DctP11.
       0.417
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.