STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadD8FadD8; long-chain-fatty-acid--CoA ligase FadD8 (Acetyl-CoA-synthetase) (Acyl-activating enzyme). (577 aa)    
Predicted Functional Partners:
fadD7
FadD7; long-chain-fatty-acid--CoA ligase FadD7 (Acetyl-CoA-synthetase) (Acyl-activating enzyme).
 
  
 
0.951
ACN16274.1
Predicted polyketide synthase.
  
 0.887
pldB
PldB; Lysophopholipase PldB (alpha/beta hydrolase family protein).
    
 0.806
alkK2
AlkK2; Medium-chain-fatty-acid--CoA ligase (Medium-chain acyl-CoA synthetase) AlkK.
  
  
  0.718
fadB
FadB; 3-hydroxyacyl-CoA dehydrogenase FadB.
 
 
 0.678
ACN15958.1
Two-component sensory box histidine kinase/response regulator protein.
 
 
0.671
fadD1
FadD1; long-chain-fatty-acid--CoA ligase FadD1 (Acetyl-CoA-synthetase) (Acyl-activating enzyme).
  
  
 
0.659
fadD3
FadD3; long-chain-fatty-acid--CoA ligase FadD3 (Acetyl-CoA-synthetase) (Acyl-activating enzyme).
  
  
 
0.641
caiC2
CaiC2; acyl-CoA synthetase (AMP-forming)/AMP-acid ligase CaiC.
  
     0.629
fadD6
FadD6; long-chain-fatty-acid--CoA ligase FadD6 (Acetyl-CoA-synthetase) (Acyl-activating enzyme).
  
  
 
0.604
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.