STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppA4DppA4; ABC-type peptide transporter, periplasmic peptide-binding protein DppA. (517 aa)    
Predicted Functional Partners:
dppB3
DppB3; ABC-type peptide transporter, permease protein DppB.
 
 0.925
dppC3
DppC3; Peptide ABC transporter, permease protein DppC.
 
 0.914
appF2
AppF2; Oligopeptide ABC-transporter, ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
  
 0.886
oppD
OppD; Peptide ABC transporter, ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
  
 0.871
appB
AppB; ABC-type oligopeptide transporter, permease protein AppB.
 
 0.688
ACN17470.1
ABC-type transport system; permease component.
 
 0.660
porA4
PorA4; Pyruvate:ferredoxin oxidoreductase, subunit PorA4.
  
  
 0.654
dppB1
DppB1; ABC-type oliopeptide/dipeptide transporter, permease protein DppB.
 
 0.643
ACN17472.1
ABC-type dipeptide transport system; permease component.
 
 0.590
ACN17973.1
ABC-type transporter, permease protein.
    
 0.579
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.