STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appF2AppF2; Oligopeptide ABC-transporter, ATP-binding protein AppF; Belongs to the ABC transporter superfamily. (342 aa)    
Predicted Functional Partners:
dppC3
DppC3; Peptide ABC transporter, permease protein DppC.
  
 0.997
dppC1
DppC1; ABC-type oliopeptide/dipeptide transporter, permease protein DppC.
  
 0.987
ACN17472.1
ABC-type dipeptide transport system; permease component.
  
 0.987
appC
AppC; ABC-type oligopeptide transport system, permease protein AppC.
  
 0.986
dppB3
DppB3; ABC-type peptide transporter, permease protein DppB.
 
 0.978
dppC2
DppC2; ABC-type dipeptide transport system permease component DppC.
  
 0.973
dppA4
DppA4; ABC-type peptide transporter, periplasmic peptide-binding protein DppA.
  
 0.886
ACN17470.1
ABC-type transport system; permease component.
 
 0.881
appB
AppB; ABC-type oligopeptide transporter, permease protein AppB.
 
 0.875
dppB1
DppB1; ABC-type oliopeptide/dipeptide transporter, permease protein DppB.
 
 0.870
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.