STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP0203Related to neuromedin U precursor (partial length). (190 aa)    
Predicted Functional Partners:
DP0627
Related to porin precursor.
  
 
 0.722
DP2262
Conserved hypothetical protein.
 
     0.720
DP2863
Unknown protein.
    
 
 0.642
DP2355
Probable acid phosphatase.
  
    0.534
DP1985
Similar to deca-heme c-type cytochrome.
  
 
 0.527
DP2365
Probable acid phosphatase.
  
    0.511
DP0343
Probable small subunit of cytochrome c nitrite reductase.
  
 
 0.498
DP1288
Hypothetical protein; Belongs to the UPF0312 family.
 
     0.425
rplY
Related to 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.408
DP0976
Conserved hypothetical membrane protein.
  
    0.403
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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