DP0345 protein (Desulfotalea psychrophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DP0345

Probable molybdenum ABC transporter, ATP-binding protein (ModF). (459 aa)

Predicted Functional Partners:

DP1352

0.812

DP0455

0.800

DP0456

0.800

DP0457

0.800

DP0464

0.800

DP0465

0.800

DP0466

0.800

DP1350

0.800

DP1351

0.800

DP0346

0.784

Your Current Organism:

Desulfotalea psychrophila

NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DP0345	DP0346	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Hypothetical protein.	0.784
DP0345	DP0455	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	0.800
DP0345	DP0456	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Probable molybdenum ABC transporter, permease protein (ModB); Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.800
DP0345	DP0457	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Probable molybdenum ABC transporter, substrate binding periplasmic protein (ModA).	0.800
DP0345	DP0464	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Related to molybdenum ABC-transporter, permease protein (ModB).	0.800
DP0345	DP0465	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Related to molybdenum ABC transporter, periplasmic substrate binding protein.	0.800
DP0345	DP0466	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Probable molybdenum ABC-transporter, ATP-binding protein.	0.800
DP0345	DP1350	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Related to molybdenum ABC-transporter, periplasmic substrate-binding protein.	0.800
DP0345	DP1351	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Related to molybdenum ABC transporter, permease protein.	0.800
DP0345	DP1352	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	Related to ABC transporter, ATP-binding protein.	0.812
DP0346	DP0345	Hypothetical protein.	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	0.784
DP0455	DP0345	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Probable molybdenum ABC transporter, ATP-binding protein (ModF).	0.800
DP0455	DP0456	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Probable molybdenum ABC transporter, permease protein (ModB); Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.999
DP0455	DP0457	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Probable molybdenum ABC transporter, substrate binding periplasmic protein (ModA).	0.996
DP0455	DP0464	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Related to molybdenum ABC-transporter, permease protein (ModB).	0.993
DP0455	DP0465	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Related to molybdenum ABC transporter, periplasmic substrate binding protein.	0.970
DP0455	DP0466	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Probable molybdenum ABC-transporter, ATP-binding protein.	0.910
DP0455	DP1350	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Related to molybdenum ABC-transporter, periplasmic substrate-binding protein.	0.928
DP0455	DP1351	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Related to molybdenum ABC transporter, permease protein.	0.986
DP0455	DP1352	Probable molybdenum ABC-transporter, ATP-binding protein (ModC); Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	Related to ABC transporter, ATP-binding protein.	0.922