STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP1681Probable cytochrome c biogenesis protein (CcsA). (280 aa)    
Predicted Functional Partners:
DP1682
Related to cytochrome c-type forming protein Ccs1.
 
  
 0.988
DP1734
Probable uroporphyrinogen III synthase/methyltransferase (HemD+CobA).
  
    0.926
DP1680
Related to lipoprotein.
  
    0.775
DP3099
Hypothetical membrane protein.
  
  
 0.687
DP0948
Probable thioredoxin.
  
  
 0.675
nrfA
Probable catalytic subunit of cytochrome c nitrite reductase; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
  
 0.563
hemA
Related to glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.550
atpB
Probable ATP synthase, A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
  
  
 0.504
DP0946
Conserved hypothetical protein.
  
  
 0.469
hemE
Probable uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.441
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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