STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAProbable L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (466 aa)    
Predicted Functional Partners:
selD
Probable selenide,water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.986
serS
Probable seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.927
DP2933
Probable selenocysteine-specific elongation factor (SelB).
  
 0.894
DP1692
Hypothetical protein.
  
    0.816
DP0968
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.803
DP1693
Conserved hypothetical protein; Belongs to the LOG family.
       0.618
DP1694
Probable twitching mobility protein.
       0.467
DP0697
Conserved hypothetical protein; Belongs to the SelU family.
 
   
 0.443
DP1366
Conserved hypothetical protein.
 
     0.417
DP2515
Related to 2-hydroxyglutaryl-CoA dehydratase, beta subunit.
 
     0.408
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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