STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP1808Related to glycolate oxidase, iron-sulfur subunit. (427 aa)    
Predicted Functional Partners:
DP0059
Probable glycolate oxidase subunit (GlcD).
 
 0.971
DP1022
Probable glycolate oxidase subunit (GlcD).
 
 0.967
DP1021
Related to glycolate oxidase, iron-sulfur subunit (GlcF).
  
  
 
0.924
DP0805
Related to beta-phosphoglucomutase.
     
  0.900
DP2134
Related to phosphoglycolate phosphatase.
     
  0.900
DP2468
Related to indigoidine systhesis protein.
     
  0.900
DP3003
Probable catalase; Belongs to the catalase family.
     
  0.900
DP3006
Conserved hypothetical iron-sulfur protein.
 
 
 0.890
DP1020
Hypothetical iron-sulfur protein.
 
 
 0.819
prfB
Probable peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.808
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.