STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP2288Related to toluene ABC-transporter, permease protein. (262 aa)    
Predicted Functional Partners:
DP2287
Related to ABC transporter, ATP-binding protein.
 0.999
DP2286
Conserved hypothetical protein.
 
 0.998
DP2285
Hypothetical protein.
 
 
 0.969
DP1893
Related to sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
   
   0.854
DP2284
Conserved hypothetical protein.
 
   
 0.829
bamA
Related to outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.646
dut
Probable deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
 
      0.589
DP0655
Conserved hypothetical protein.
 
   
 0.533
DP2409
Related to biopolymer transport protein (TolQ).
  
     0.523
DP0441
Probable ABC transporter, ATP-binding protein.
 
  
  0.522
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.