STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP2418Conserved hypothetical protein. (295 aa)    
Predicted Functional Partners:
DP2419
Related to serine/threonine protein kinase.
 
 
 0.916
DP2573
Related to serine/threonine protein kinase.
 
 0.859
DP1002
Related to serine/threonine-protein kinase.
 
 0.849
DP2570
Hypothetical protein.
 
 
 0.762
fmt
Probable methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.712
DP1645
Probable peptidyl-prolyl cis-trans isomerase.
    
 
 0.621
DP2213
Hypothetical protein.
  
  
 0.574
DP0301
Related to glycine cleavage system, T protein; Belongs to the GcvT family.
   
  0.553
DP0124
Related to SUN protein (FMU protein); Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.549
DP2425
Related to cell division protein (FtsW); Belongs to the SEDS family.
  
 0.531
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.