STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP2686Unknown protein. (172 aa)    
Predicted Functional Partners:
flgK
Related to Flagellar hook-associated protein 1 (FlgK).
 
    0.829
DP2687
Similar to regulator of flagellin synthesis, FlgM (partial length).
       0.798
DP2688
Unknown protein.
       0.798
fliW2
Hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
 
   0.702
DP2690
Related to flagellar hook-associated protein 3 (FlgL).
  
    0.665
DP2685
Related to flagellar muramidase protein (FlgJ).
       0.502
DP2682
Related to flagellar protein (FlgA).
 
     0.500
csrA
Probable carbon storage regulator (CsrA); A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
       0.422
flgI
Probable flagellar P-ring protein (FlgI); Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
       0.408
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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