Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DP0818 | DP2783 | DP0818 | DP2783 | Probable DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.965 |
| DP0818 | rpsT | DP0818 | DP1618 | Probable DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | Probable 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.526 |
| DP0900 | DP2783 | DP0900 | DP2783 | Probable DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.964 |
| DP0900 | rpsT | DP0900 | DP1618 | Probable DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | Probable 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.526 |
| DP2169 | DP2783 | DP2169 | DP2783 | Probable DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.877 |
| DP2169 | rpsT | DP2169 | DP1618 | Probable DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Probable 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.526 |
| DP2782 | DP2783 | DP2782 | DP2783 | Probable type 4 fimbrial assembly protein (PilC). | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.466 |
| DP2783 | DP0818 | DP2783 | DP0818 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | 0.965 |
| DP2783 | DP0900 | DP2783 | DP0900 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.964 |
| DP2783 | DP2169 | DP2783 | DP2169 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.877 |
| DP2783 | DP2782 | DP2783 | DP2782 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable type 4 fimbrial assembly protein (PilC). | 0.466 |
| DP2783 | acpP-2 | DP2783 | DP2789 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.686 |
| DP2783 | clpS | DP2783 | DP0887 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.502 |
| DP2783 | csrA | DP2783 | DP2691 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable carbon storage regulator (CsrA); A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.589 |
| DP2783 | dksA | DP2783 | DP1484 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | 0.489 |
| DP2783 | rpmI | DP2783 | DP1426 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.537 |
| DP2783 | rpsT | DP2783 | DP1618 | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Probable 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.526 |
| acpP-2 | DP2783 | DP2789 | DP2783 | Probable acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Probable integration host factor, alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.686 |
| acpP-2 | dksA | DP2789 | DP1484 | Probable acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Probable DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | 0.509 |
| acpP-2 | rpmI | DP2789 | DP1426 | Probable acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Probable 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.671 |
page 1 of 2