STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP2938Probable aspartate aminotransferase. (395 aa)    
Predicted Functional Partners:
DP2171
Probable P-protein.
 
 
 0.963
DP2275
Related to P-protein.
  
 
 0.943
DP2948
Probable cystathionine beta-lyase.
  
 
 0.925
DP0632
Probable glutamate synthase, beta subunit.
  
 0.923
DP2751
Conserved hypothetical protein; Belongs to the acetyltransferase family.
  
  
  0.922
mdh
Probable malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 0.921
argG
Probable argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.920
DP2491
Probable delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 0.918
DP0617
Probable aspartate aminotransferase.
   
 0.917
DP2623
Related to glutamate synthase, alpha subunit.
  
 
 0.915
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.