STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP2969Hypothetical protein. (264 aa)    
Predicted Functional Partners:
DP2978
Related to iron (III) ABC transporter, ATP-binding protein.
 
    0.805
DP2975
Unknown protein.
 
     0.803
DP2974
Related to transport protein TolQ.
 
    0.801
DP2981
Related to TonB dependent outer membrane receptor.
 
     0.796
DP2980
Probable iron (III) ABC transporter, periplasmic-binding protein.
 
    0.780
DP2970
Unknown protein.
  
    0.775
DP2973
Related to biopolymer transport protein (ExbB).
  
    0.774
DP2971
Similar to TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
       0.773
DP2972
Probable biopolymer transport protein (ExbD2).
       0.767
DP2979
Probable iron (III) ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.750
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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