STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP3060Related to Mn/Zn ABC transporter, periplasmic solute binding protein. (283 aa)    
Predicted Functional Partners:
DP3061
Related to Mn/Zn ABC transporter, ATP-binding protein.
 
 
 0.999
DP3062
Probable Mn/Zn ABC transporter, permease.
 
 
 0.998
DP0603
Related to ABC transporter, ATP-binding protein.
  
  
 0.820
rpsZ
Probable 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.643
rpmB
Probable 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.619
DP3059
Related to chloride channel protein.
       0.562
DP3063
Unknown protein.
       0.528
purL
Probable phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
     
 0.523
DP2966
Probable iron-dependent repressor.
  
  
 0.502
fur
Probable ferric uptake regulatory protein; Belongs to the Fur family.
  
  
 0.457
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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