STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPPB03Related to plasmid partition protein ParA. (213 aa)    
Predicted Functional Partners:
DP1888
Conserved hypothetical protein.
  
 
 0.822
DPPB02
Unknown protein.
       0.737
DPPB01
Related to transcriptional repressor protein TrfA.
       0.708
DPPB25
Probable conjugal transfer protein TraF precursor.
 
     0.573
DPPB43
Related to TraI protein (partial length).
 
   
 0.501
DPPB14
Probable conjugal transfer protein TrbE.
 
   
 0.496
DPPB57
Related to TraI protein (partial length).
 
   
 0.489
DPPB24
Probable TraG protein, C-terminal part.
 
   
 0.485
DPPB23
Probable TraG protein, N-terminal part.
 
   
 0.478
dnaA
Related to chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
  
 
 0.465
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.