Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DPPB100Probable transcription regulator. (398 aa)    
Predicted Functional Partners:
DP0883
Related to two-component system sensory/regulatory protein (hybrid family).
   
 
 0.667
DP2292
Related to two-component system sensory/regulatory protein (hybrid family).
   
 
 0.654
rpoB
Probable DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.635
DP1793
Related to two-component system sensory/regulatory protein (hybrid family).
   
 
 0.633
DP0930
Probable glutamine synthetase.
  
 
 0.618
DP1471
Probable heavy-metal transporting ATPase.
  
  
 0.592
DPPB99
Hypothetical protein.
       0.582
rpoC
Probable DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.575
rpoA
Probable DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.546
DP2624
Related to glutamate synthase, beta subunit.
  
 
 0.529
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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