STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPPB43Related to TraI protein (partial length). (334 aa)    
Predicted Functional Partners:
DPPB22
Related to DNA primase TraC.
 
     0.812
DPPB14
Probable conjugal transfer protein TrbE.
 
   
 0.789
DPPB24
Probable TraG protein, C-terminal part.
 
   
 0.785
DPPB10
Probable conjugal transfer protein TraL.
 
   
 0.784
DPPB25
Probable conjugal transfer protein TraF precursor.
 
     0.783
DPPB23
Probable TraG protein, N-terminal part.
 
   
 0.781
DPPB44
Related to TraJ protein.
       0.780
DPPB16
Probable conjugal transfer protein TrbL.
 
     0.777
DPPB18
Probable conjugal transfer protein TrbG.
 
     0.777
DPPB17
Probable conjugal transfer protein TrbF.
  
     0.773
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.