DPPB96 protein (Desulfotalea psychrophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DPPB96

Probable transposition resolvase. (186 aa)

Predicted Functional Partners:

DPPB95

0.911

DPPB93

0.808

DPPB94

0.793

DPPB92

0.781

DP0214

0.504

Your Current Organism:

Desulfotalea psychrophila

NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DP0214	DPPB96	Hypothetical membrane protein.	Probable transposition resolvase.	0.504
DPPB92	DPPB93	Probable transposase (partial length).	Probable transposase (partial length).	0.989
DPPB92	DPPB94	Probable transposase (partial length).	Probable transposase (partial length).	0.986
DPPB92	DPPB95	Probable transposase (partial length).	Probable transposase (partial length).	0.985
DPPB92	DPPB96	Probable transposase (partial length).	Probable transposition resolvase.	0.781
DPPB93	DPPB92	Probable transposase (partial length).	Probable transposase (partial length).	0.989
DPPB93	DPPB94	Probable transposase (partial length).	Probable transposase (partial length).	0.989
DPPB93	DPPB95	Probable transposase (partial length).	Probable transposase (partial length).	0.988
DPPB93	DPPB96	Probable transposase (partial length).	Probable transposition resolvase.	0.808
DPPB94	DPPB92	Probable transposase (partial length).	Probable transposase (partial length).	0.986
DPPB94	DPPB93	Probable transposase (partial length).	Probable transposase (partial length).	0.989
DPPB94	DPPB95	Probable transposase (partial length).	Probable transposase (partial length).	0.992
DPPB94	DPPB96	Probable transposase (partial length).	Probable transposition resolvase.	0.793
DPPB95	DPPB92	Probable transposase (partial length).	Probable transposase (partial length).	0.985
DPPB95	DPPB93	Probable transposase (partial length).	Probable transposase (partial length).	0.988
DPPB95	DPPB94	Probable transposase (partial length).	Probable transposase (partial length).	0.992
DPPB95	DPPB96	Probable transposase (partial length).	Probable transposition resolvase.	0.911
DPPB96	DP0214	Probable transposition resolvase.	Hypothetical membrane protein.	0.504
DPPB96	DPPB92	Probable transposition resolvase.	Probable transposase (partial length).	0.781
DPPB96	DPPB93	Probable transposition resolvase.	Probable transposase (partial length).	0.808