STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODR96980.1Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (450 aa)    
Predicted Functional Partners:
AUC69_12630
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.903
AUC69_10125
Peptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.
  
  
  0.750
ODR95430.1
Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.745
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
 
  0.745
pepN
Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.694
ODS01665.1
Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M17 family.
  
 
 0.677
AUC69_09220
IMP dehydrogenase; Catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.669
metX
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
    
  0.654
ODS01622.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AB hydrolase superfamily. MetX family.
    
  0.654
ODR96104.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.650
Your Current Organism:
Methyloceanibacter superfactus
NCBI taxonomy Id: 1774969
Other names: LMG 29430, LMG:29430, M. superfactus, Methyloceanibacter sp. R-67175, strain R-67175
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.