STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ktrB_2Ktr system potassium uptake protein B. (488 aa)    
Predicted Functional Partners:
ktrA_2
Ktr system potassium uptake protein A.
 
  0.991
ktrA_1
Ktr system potassium uptake protein A.
 
  0.965
rimK
Ribosomal protein S6--L-glutamate ligase; Belongs to the RimK family.
  
  0.861
kcsA_1
pH-gated potassium channel KcsA.
  
  0.847
kcsA_2
pH-gated potassium channel KcsA.
  
  0.847
KZE88878.1
Hypothetical protein.
  
  0.847
sdpR_2
Transcriptional repressor SdpR.
       0.583
atpE
ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
    
  0.506
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
 
  0.487
Your Current Organism:
Agromyces sp. NDB4Y10
NCBI taxonomy Id: 1775951
Other names: A. sp. NDB4Y10
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