STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluFRibosomal large subunit pseudouridine synthase F; Belongs to the pseudouridine synthase RsuA family. (248 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase.
 
  
 0.843
ligA_3
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.793
CUX45777.1
Hypothetical protein.
       0.785
exoA
Exodeoxyribonuclease.
  
    0.779
patA_2
Peptidoglycan O-acetyltransferase; Belongs to the membrane-bound acyltransferase family.
       0.774
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.737
der_2
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.704
CUX45743.1
GDSL-like Lipase/Acylhydrolase.
       0.684
CUX45757.1
Hypothetical protein.
       0.684
der_1
GTPase Der.
  
  
 0.581
Your Current Organism:
Clostridium sp. C105KSO13
NCBI taxonomy Id: 1776045
Other names: C. sp. C105KSO13
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.