STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORV68585.1Signal transduction histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (64 aa)    
Predicted Functional Partners:
ORV68586.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.838
ORV68587.1
Limonene-1,2-epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.764
nucS
Endonuclease; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
   
 0.634
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
      
 0.579
recX
Recombinase RecX; Modulates RecA activity; Belongs to the RecX family.
       0.566
ORV75428.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
recA
DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (By similarity).
       0.553
ORV66661.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
ORV65883.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
ORV73566.1
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
Your Current Organism:
Mycobacterium gastri
NCBI taxonomy Id: 1777
Other names: ATCC 15754, CCUG 20995, CIP 104530, DSM 43505, JCM 12407, M. gastri
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