Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ORV65877.1 | ORV65878.1 | AWC07_12530 | AWC07_12535 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.718 |
ORV65877.1 | ctaB | AWC07_12530 | AWC07_12540 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.429 |
ORV65878.1 | ORV65877.1 | AWC07_12535 | AWC07_12530 | Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.718 |
ORV65878.1 | ctaB | AWC07_12535 | AWC07_12540 | Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.456 |
ctaB | ORV65877.1 | AWC07_12540 | AWC07_12530 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.429 |
ctaB | ORV65878.1 | AWC07_12540 | AWC07_12535 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.456 |