STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI80777.1Hypothetical protein. (42 aa)    
Predicted Functional Partners:
CVI80779.1
Major facilitator transporter.
       0.755
CVI80775.1
Hypothetical protein.
       0.439
Your Current Organism:
Caballeronia concitans
NCBI taxonomy Id: 1777133
Other names: Burkholderia concitans, Burkholderia concitans Peeters et al. 2016, Burkholderia sp. LMG 29315, C. concitans, CCUG 68414, Caballeronia concitans (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29315, LMG:29315, strain AU12121
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