STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVJ11143.1ATP-dependent transcription regulator LuxR. (890 aa)    
Predicted Functional Partners:
CVJ74068.1
LuxR family transcriptional regulator.
 
  
 0.867
CVJ40355.1
Alpha/beta hydrolase.
    
 0.668
CVJ29913.1
Porin.
  
     0.659
CVI89591.1
Amine dehydrogenase.
  
     0.629
CVJ22218.1
Glycosyltransferase; Belongs to the glycosyl hydrolase 26 family.
  
     0.624
CVJ29863.1
Transport protein.
  
     0.621
CVJ31555.1
Hypothetical protein.
 
     0.603
CVI89606.1
Methylamine utilization protein MauE.
  
     0.595
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
  
  0.586
CVJ11194.1
Taurine dioxygenase.
 
     0.584
Your Current Organism:
Caballeronia turbans
NCBI taxonomy Id: 1777134
Other names: Burkholderia sp. LMG 29316, Burkholderia turbans, Burkholderia turbans Peeters et al. 2016, C. turbans, CCUG 68413, Caballeronia turbans (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29316, LMG:29316, strain HI4065
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