STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAK51828.1Amidohydrolase. (397 aa)    
Predicted Functional Partners:
SAK51819.1
Hypothetical protein.
       0.776
SAK85350.1
Glutamate synthase.
    
  0.735
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.622
SAK51833.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.535
dapD
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
  
  
 0.524
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.515
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 
  0.472
SAK40768.1
Aminopeptidase N.
   
 
  0.463
SAK64307.1
Cystathionine beta-lyase.
 
 
  0.409
Your Current Organism:
Caballeronia temeraria
NCBI taxonomy Id: 1777137
Other names: Burkholderia sp. LMG 29319, Burkholderia temeraria, Burkholderia temeraria Peeters et al. 2016, C. temeraria, CCUG 68410, Caballeronia temeraria (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29319, LMG:29319
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