Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SAK50923.1 | cmk | AWB79_01698 | AWB79_03906 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.783 |
SAK50923.1 | der | AWB79_01698 | AWB79_04599 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.872 |
SAK50923.1 | pyrH | AWB79_01698 | AWB79_03375 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.406 |
SAK74738.1 | SAK76958.1 | AWB79_04400 | AWB79_04679 | NAD-dependent glycerol-3-phosphate dehydrogenase-like protein. | GTP-binding protein TypA. | 0.439 |
SAK74738.1 | der | AWB79_04400 | AWB79_04599 | NAD-dependent glycerol-3-phosphate dehydrogenase-like protein. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.889 |
SAK76958.1 | SAK74738.1 | AWB79_04679 | AWB79_04400 | GTP-binding protein TypA. | NAD-dependent glycerol-3-phosphate dehydrogenase-like protein. | 0.439 |
SAK76958.1 | der | AWB79_04679 | AWB79_04599 | GTP-binding protein TypA. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.887 |
SAK76958.1 | gpsA | AWB79_04679 | AWB79_00293 | GTP-binding protein TypA. | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.439 |
SAK76958.1 | pyrH | AWB79_04679 | AWB79_03375 | GTP-binding protein TypA. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.473 |
SAK76958.1 | secA | AWB79_04679 | AWB79_05641 | GTP-binding protein TypA. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.415 |
SAK77025.1 | cmk | AWB79_04690 | AWB79_03906 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.809 |
SAK77025.1 | der | AWB79_04690 | AWB79_04599 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.880 |
SAK77025.1 | ffh | AWB79_04690 | AWB79_05663 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.430 |
cmk | SAK50923.1 | AWB79_03906 | AWB79_01698 | Cytidylate kinase. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.783 |
cmk | SAK77025.1 | AWB79_03906 | AWB79_04690 | Cytidylate kinase. | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.809 |
cmk | der | AWB79_03906 | AWB79_04599 | Cytidylate kinase. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.993 |
cmk | ffh | AWB79_03906 | AWB79_05663 | Cytidylate kinase. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.832 |
cmk | gpsA | AWB79_03906 | AWB79_00293 | Cytidylate kinase. | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.406 |
cmk | pyrH | AWB79_03906 | AWB79_03375 | Cytidylate kinase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.894 |
der | SAK50923.1 | AWB79_04599 | AWB79_01698 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.872 |
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