STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI94742.1ABC transporter permease. (262 aa)    
Predicted Functional Partners:
CVI94769.1
ABC transporter-like protein.
 
 0.999
CVI94785.1
Periplasmic solute binding protein.
 
 
 0.999
CVJ46491.1
Putative DNA-binding protein.
  
 
 0.875
fur
Ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.855
CVJ64181.1
Threonine synthase.
    
  0.688
CVI96791.1
ABC transporter-like protein.
    
 0.674
CVJ01533.1
ABC transporter-like protein.
    
 0.674
CVJ49147.1
ABC transporter-like protein.
    
 0.674
CVK10342.1
ABC transporter-like protein.
    
 0.674
CVJ10969.1
ABC transporter-like protein; Belongs to the ABC transporter superfamily.
    
  0.615
Your Current Organism:
Caballeronia pedi
NCBI taxonomy Id: 1777141
Other names: Burkholderia pedi, Burkholderia pedi Peeters et al. 2016, Burkholderia sp. LMG 29323, Burkholderia sp. R-52605, C. pedi, CCUG 68406, Caballeronia pedi (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29323, LMG:29323
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