STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVJ12299.1TrapT dctQ-M fusion permease, dicarboxylate transport. (628 aa)    
Predicted Functional Partners:
CVJ93433.1
TRAP transporter DctM family protein.
 
0.999
CVJ12317.1
TRAP dicarboxylate family transporter subunit DctP.
 
 
 0.994
CVJ93422.1
Solute-binding family 7 protein.
 
 
 0.984
CVK03783.1
TRAP dicarboxylate family transporter subunit DctP.
 
 
 0.984
CVK04149.1
TRAP dicarboxylate family transporter subunit DctP.
 
 0.984
CVJ67282.1
TRAP dicarboxylate transporter, DctP subunit.
 
 
 0.983
CVJ67267.1
Tripartite ATP-independent periplasmic transporter DctQ.
 
 0.965
CVJ67242.1
TRAP dicarboxylate transporter, DctM subunit.
 
0.919
CVK04139.1
TrapT dctQ-M fusion permease, dicarboxylate transport.
 
0.899
CVK03792.1
TrapT dctQ-M fusion permease, dicarboxylate transport.
 
0.898
Your Current Organism:
Caballeronia pedi
NCBI taxonomy Id: 1777141
Other names: Burkholderia pedi, Burkholderia pedi Peeters et al. 2016, Burkholderia sp. LMG 29323, Burkholderia sp. R-52605, C. pedi, CCUG 68406, Caballeronia pedi (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29323, LMG:29323
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.