STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVJ70634.1Phage integrase family protein. (307 aa)    
Predicted Functional Partners:
CVJ70655.1
Hypothetical protein.
       0.697
CVJ92852.1
Branched-chain alpha-keto acid dehydrogenase subunit E2.
  
  
 0.573
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.507
CVJ77037.1
Flagellar basal body rod protein FlgF.
    
   0.506
CVI88315.1
ComF family protein.
   
    0.489
CVK13372.1
Hypothetical protein.
   
    0.489
CVJ96542.1
Prephenate dehydrogenase.
  
    0.469
CVK10243.1
Prephenate dehydrogenase.
  
    0.469
CVJ70609.1
DNA-binding protein.
       0.465
yedK
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
    0.455
Your Current Organism:
Caballeronia pedi
NCBI taxonomy Id: 1777141
Other names: Burkholderia pedi, Burkholderia pedi Peeters et al. 2016, Burkholderia sp. LMG 29323, Burkholderia sp. R-52605, C. pedi, CCUG 68406, Caballeronia pedi (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29323, LMG:29323
Server load: low (18%) [HD]