STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVK12877.1FCD domain protein. (219 aa)    
Predicted Functional Partners:
CVJ45928.1
GntR family transcriptional regulator.
  
     0.774
CVK07994.1
GntR family transcriptional regulator.
  
     0.774
CVK09428.1
GntR family transcriptional regulator.
  
     0.774
CVK13329.1
GntR family transcriptional regulator.
  
     0.774
CVJ08893.1
GntR family transcriptional regulator.
  
     0.768
CVK11851.1
DNA-binding transcriptional regulator GlcC.
  
    0.758
CVJ34347.1
GntR family transcriptional regulator.
  
    0.755
CVK06909.1
GntR family transcriptional regulator.
  
    0.751
CVJ66264.1
GntR family transcriptional regulator.
  
     0.741
CVK13455.1
GntR family transcriptional regulator.
  
    0.732
Your Current Organism:
Caballeronia pedi
NCBI taxonomy Id: 1777141
Other names: Burkholderia pedi, Burkholderia pedi Peeters et al. 2016, Burkholderia sp. LMG 29323, Burkholderia sp. R-52605, C. pedi, CCUG 68406, Caballeronia pedi (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29323, LMG:29323
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.