STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVJ60051.1Amidohydrolase. (296 aa)    
Predicted Functional Partners:
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.802
CVJ60015.1
Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
       0.769
CVJ60027.1
L-arabinose transporter permease; Belongs to the binding-protein-dependent transport system permease family.
       0.769
rbsA
D-ribose transporter ATP binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.768
CVJ57469.1
Aldo/keto reductase.
  
  0.741
CVJ19405.1
Aldo/keto reductase.
  
  0.709
CVJ70751.1
Mandelate racemase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.678
CVJ60003.1
Substrate binding component of ABC transporter.
 
     0.646
rhmD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
  
  0.644
CVI97556.1
Oxidoreductase FAD/NAD(P)-binding protein.
    
  0.613
Your Current Organism:
Caballeronia glebae
NCBI taxonomy Id: 1777143
Other names: Burkholderia glebae, Burkholderia glebae Peeters et al. 2016, Burkholderia sp. LMG 22938, Burkholderia sp. LMG 29325, C. glebae, CCUG 68404, Caballeronia glebae (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29325, LMG:29325
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