STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVJ87781.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
CVJ87788.1
Hypothetical protein.
       0.767
CVJ87770.1
ATPase.
       0.480
CVJ87813.1
AbrB family transcriptional regulator.
       0.471
vapC-7
PIN domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.471
Your Current Organism:
Caballeronia glebae
NCBI taxonomy Id: 1777143
Other names: Burkholderia glebae, Burkholderia glebae Peeters et al. 2016, Burkholderia sp. LMG 22938, Burkholderia sp. LMG 29325, C. glebae, CCUG 68404, Caballeronia glebae (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29325, LMG:29325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.