STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVJ78294.1Peptidase M48 Ste24p. (304 aa)    
Predicted Functional Partners:
CVJ56717.1
Tetratricopeptide repeat protein.
    
 0.838
CVJ78284.1
AmpG-related permease.
       0.808
ribB
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
 
  
  0.776
CVK01093.1
Signal transduction histidine kinase with CheB and CheR activity.
    
 0.772
CVJ86535.1
Multi-sensor hybrid histidine kinase.
    
 0.759
CVI91283.1
Lipoprotein NlpD.
   
 
 0.714
CVJ72619.1
Hypothetical protein.
   
 
 0.714
CVK01103.1
Chemotaxis protein.
    
 0.700
CVJ78272.1
Methionine biosynthesis protein MetW.
 
     0.691
CVJ22610.1
Sensor kinase/response regulator fusion protein.
    
 0.686
Your Current Organism:
Caballeronia ptereochthonis
NCBI taxonomy Id: 1777144
Other names: Burkholderia ptereochthonis, Burkholderia ptereochthonis Peeters et al. 2016, Burkholderia sp. LMG 29326, C. ptereochthonis, CCUG 68403, Caballeronia ptereochthonis (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29326, LMG:29326
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