STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBJ76045.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)    
Predicted Functional Partners:
OBJ88767.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.879
thiL
Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
  
    0.864
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
  
    0.864
OBJ76044.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.847
OBJ86929.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.840
OBJ86926.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.838
OBJ84404.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.762
OBJ77248.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.743
OBJ86927.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.705
OBJ76051.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.692
Your Current Organism:
Mycobacterium gordonae
NCBI taxonomy Id: 1778
Other names: ATCC 14470, CCUG 21801, CCUG 21811, CIP 104529, DSM 44160, JCM 6382, M. gordonae, NCTC 10267
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.