STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBJ75855.1Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
OBJ75854.1
Urease accessory protein UreF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
OBJ75853.1
Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.997
OBJ75852.1
Urease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.995
OBJ75856.1
Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
OBJ75851.1
Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
OBJ77636.1
Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.978
hypA
Hydrogenase expression protein HupH; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
 
 0.833
hypA-2
Hydrogenase expression protein HupH; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
 
 0.833
tsaD
tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
     
 0.670
OBJ83354.1
Hydrogenase formation protein HypD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.581
Your Current Organism:
Mycobacterium gordonae
NCBI taxonomy Id: 1778
Other names: ATCC 14470, CCUG 21801, CCUG 21811, CIP 104529, DSM 44160, JCM 6382, M. gordonae, NCTC 10267
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