STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBJ86069.1Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1410 aa)    
Predicted Functional Partners:
OBJ86070.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.953
A9W97_03810
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.808
OBJ78528.1
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
OBJ78529.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
OBJ87749.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.791
OBJ87752.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.694
A9W97_27965
Aminoglycoside phosphotransferase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.694
OBJ77533.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.606
OBJ88517.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.606
OBJ79336.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.606
Your Current Organism:
Mycobacterium gordonae
NCBI taxonomy Id: 1778
Other names: ATCC 14470, CCUG 21801, CCUG 21811, CIP 104529, DSM 44160, JCM 6382, M. gordonae, NCTC 10267
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.