STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBJ85549.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)    
Predicted Functional Partners:
OBJ86346.1
PE-PGRS family protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.677
OBJ82913.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.657
A9W97_20420
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.602
A9W97_12590
Spermidine synthase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
OBJ85550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
OBJ78161.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
OBJ85547.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.453
OBJ85548.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
dcd
Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
       0.432
OBJ78697.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
Your Current Organism:
Mycobacterium gordonae
NCBI taxonomy Id: 1778
Other names: ATCC 14470, CCUG 21801, CCUG 21811, CIP 104529, DSM 44160, JCM 6382, M. gordonae, NCTC 10267
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.