STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpBHypothetical protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (463 aa)    
Predicted Functional Partners:
KYH39844.1
Hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
  0.620
KYH39465.1
Phospholipase D/transphosphatidylase.
    
  0.608
KYH41609.1
Aminotransferase class I and II.
     
 0.591
KYH40155.1
Homoserine dehydrogenase.
    
  0.559
KYH39629.1
Homoserine dehydrogenase.
    
  0.559
KYH40680.1
Intracellular protease, PfpI family.
    
  0.531
KYH40264.1
Glutamine amidotransferase.
    
  0.531
KYH39556.1
Hypothetical protein.
    
  0.531
KYH40333.1
Hypothetical protein.
       0.475
KYH40335.1
Ferredoxin.
       0.455
Your Current Organism:
Bathyarchaeota archaeon B262
NCBI taxonomy Id: 1779371
Other names: Bathyarchaeota archaeon B26-2, C. Bathyarchaeota archaeon B26-2, Candidatus Bathyarchaeota archaeon B26-2
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