Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OCB40688.1Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)    
Predicted Functional Partners:
OCB40689.1
4-hydroxybenzoyl-CoA reductase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
OCB40687.1
Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.986
OCB34429.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.947
OCB33225.1
Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.946
OCB34432.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.944
OCB33224.1
Carbon-monoxide dehydrogenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.943
OCB33223.1
Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.829
OCB33231.1
XshC-Cox1 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.824
OCB40686.1
Molybdopterin-guanine dinucleotide biosynthesis protein MobA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.769
OCB33222.1
Membrane oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.734
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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