STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB38117.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)    
Predicted Functional Partners:
OCB36264.1
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.902
OCB38118.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.874
OCB40941.1
Reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
 0.757
OCB38119.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.700
OCB34706.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.659
OCB38120.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.604
OCB36501.1
FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.567
OCB38137.1
Gamma-butyrobetaine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.533
OCB40542.1
Taurine catabolism dioxygenase TauD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.533
OCB35934.1
Taurine catabolism dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.533
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.