Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OCB34411.1MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)    
Predicted Functional Partners:
OCB34412.1
rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.872
OCB34413.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.872
OCB34410.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.719
OCB40490.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.649
OCB34409.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.534
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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